dSpacer-5’-CE Phosphoramidite

3'-O-Dimethoxytrityl-1',2'-Dideoxyribose-5'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite

Product Specifications

Formula:
C35H45N2O6P
M.W.:
620.73
F.W.:
180.10
CAS Number:
401813-16-9
To Retrieve a Catalog Number, Select a Pack Size and Format:

Description

In oligonucleotide applications, there is often a need to introduce blocking groups on the 3’-end and sometimes at the 5’-end as well. These blocking groups can provide exonuclease protection or prevent polymerase extension. One such blocking group is an inverted dSpacer, which can be incorporated with dSpacer-5’-CE Phosphoramidite during standard 3’ to 5’ syntheses.

Details

Usage

  • Coupling: No changes needed from standard method recommended by synthesizer manufacturer.
  • Deprotection: No changes needed from standard method recommended by synthesizer manufacturer.
Specifications
Diluent Anhydrous Acetonitrile
Storage Freezer storage, -10 to -30°C, dry
Stability 2-3 Days

Dilution/Coupling Data

The table below show pack size data and, for solutions, dilution and approximate coupling based on normal priming procedures.

ABI 392/394

Catalog # Pack Size Grams/Pack 0.1M Dil. (mL) Approximate Number of Additions
LV40 LV200 40nm 0.2μm 1μm 10μm
10-4191-90 100 µmol 0.06 1 20 12 7.5 5.4 4 1
10-4191-02 0.25 g 0.25 4.03 121 72.6 45.3 33 24.2 6

Expedite

Catalog # Pack Size Grams/Pack Dilution (mL) Approximate Number of Additions
Molarity 50nm 0.2μm 1μm 15μm
10-4191-90E 100 µmol 0.06 1.5 0.07 23.6 14.8 10.7 1.5
10-4191-02E 0.25 g 0.25 6.01 0.07 113.8 71.1 51.7 7.1