C8-TIPS-Alkyne-dT-CE Phosphoramidite

5'-Dimethoxytrityl-5-[8-triisopropylsilyl-octa-1,7-diynyl]-2'-deoxyThymidine,3'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite

This product has been discontinued.

We have discontinued this product permanently. Please find recommended products below.
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Product Specifications

Formula:
C56H75N4O8PSi
M.W.:
991.28
To Retrieve a Catalog Number, Select a Pack Size and Format:

Recommended Products

C8-Alkyne-dT-CE Phosphoramidite
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Technical Documents

Glen Report 23.13: New Products – Click Chemistry Update

Glen Report 24.26: Advances in Copper(I)-Catalyzed Azide-Alkyne Cycloaddition (CuAAC)

Glen Report 29.15: Sequence Modification Using Glen Research's 5-Modified dU Family

Glen Report 24.27: Introducing Oligo-Click Kits

Description

5-Ethynyl-dU offers convenient click conjugation with an azide to generate a label rigidly attached to one of the oligonucleotide bases. 5-Ethynyl-dU is subject to base-catalyzed hydration during cleavage and deprotection, especially when using a strong base or heat. Hydration of an ethynyl group forms a methyl ketone which subsequently blocks potential click reactions. Mild deprotection conditions are necessary when using 5-Ethynyl-dU-CE Phosphoramidite to prevent this side reaction. TIPS-5-Ethynyl-dU-CE Phosphoramidite, containing a protected alkyne, offers broader compatibility with oligonucleotide synthesis and deprotection. Protecting the 5-ethynyl group with a triisopropylsilyl (TIPS) protecting group prevents acid or base catalyzed hydration during oligonucleotide synthesis and workup. A quick treatment with TBAF removes the TIPS protecting group.

Details

Usage

  • Coupling: 3 minute coupling time recommended.
  • Deprotection: Ammonium hydroxide for 2 hours at 55°C or as required by nucleobases.|TIPS removal: After deprotection, dry down oligo and take up in 0.5 mL DMF. Add 0.1 mL TBAF. Vortex and keep at 45°C for 15 minutes. Quench with 0.5 mL 2 M TEAA and desalt on Glen Gel-Pak™ column or equivalent.
Specifications
Diluent Anhydrous Acetonitrile
Storage Freezer storage, -10 to -30�C, dry
Stability 1-2 days

Intellectual Property

baseclick GmbH has been granted the following patents (1-3) besides its further patent applications (4-5). |1. WO  2006/117161  (New  labelling  strategies  for  the  sensitive detection of analytes)|2. WO 2008/952775 (Click chemistry for the production of reporter molecules)|3. WO 2010/115957 (Click Chemistry on heterogeneous catalysts)|4. PCT/EP 2013/064610 (Anandamide-modified nucleic molecules)|5. PCT/EP 2015/056007 (Self-assembly of DNA Origami: a diagnostic tool)|baseclick GmbH holds a worldwide exclusive license for granted patent application|WO 03/101972 (Copper-catalysed ligation of azides and acetylenes  for  the  nucleic  acid field) in the area of diagnostics and research. As Glen Research and baseclick are partners, Glen Research is now able to help in sublicensing this outstanding technology.

Dilution/Coupling Data

The table below show pack size data and, for solutions, dilution and approximate coupling based on normal priming procedures.

ABI 392/394

Catalog # Pack Size Grams/Pack 0.1M Dil. (mL) Approximate Number of Additions
LV40 LV200 40nm 0.2μm 1μm 10μm
10-1544-02 0.25 g .25grams 2.52 70.67 42.4 26.5 19.27 14.13 3.53
10-1544-90 100 µmol .099grams 1 20 12 7.5 5.45 4 1
10-1544-95 50 µmol .05grams 0.5 3.33 2 1.25 0.91 0.67 0.17

Expedite

Catalog # Pack Size Grams/Pack Dilution (mL) Approximate Number of Additions
Molarity 50nm 0.2μm 1μm 15μm
10-1544-02 0.25 g .25grams 3.76 0.07 68.8 43 31.27 4.3
10-1544-90 100 µmol .099grams 1.5 0.07 23.6 14.75 10.73 1.48
10-1544-95 50 µmol .05grams 0.75 0.07 8.6 5.38 3.91 0.54

References

REFERENCE(S)| 1 C.W. Tornoe, C. Christensen, M. Meldal, J. Org. Chem. 2002, 67, 3057-3064; V. V. Rostovtsev, L. G. Green, V. V. Fokin, K. B. Sharpless, Angew. Chem. 2002, 114, 2708-2711; Angew. Chem. Int. Ed. 2002, 41, 2596-2599.| 2 C. J. Burrows, J. G. Muller, Chem. Rev. 1998, 98, 1109 – 1151.| 3 T. R. Chan, R. Hilgraf, K. B. Sharpless, V. V. Fokin, Org. Lett. 2004, 6, 2853 – 2855.| 4 J. Gierlich, G. A. Burley, P. M. E. Gramlich, D. M. Hammond, T. Carell, Org. Lett. 2006, 8, 3639-3642. F. Seela, V. R. Sirivolu, Chem. Biodiversity 2006, 3, 509-514.| 5 P. M. E. Gramlich, S. Warncke, J. Gierlich, T. Carell, Angew. Chem. 2008, 120, 3491–3493; Angew. Chem. Int. Ed. 2008, 47, 3442– 3444.| 6 P. M. E. Gramlich, C. T. Wirges, A. Manetto, T. Carell, Angew. Chem. Int. Ed. 2008, 47, 8350-8358.