Amino-Modifier C2 dT

5'-Dimethoxytrityl-5-[N-(trifluoroacetylaminoethyl)-3-acrylimido]-2'-deoxyUridine,3'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite
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Product Specifications

Formula:
C46H54N6O10F3P
M.W.:
938.94
F.W.:
402.30
CAS Number:
198080-39-6
To Retrieve a Catalog Number, Select a Pack Size and Format:
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Technical Documents

Aptamers as Drugs

Safety Data Sheet

Glen Report 26.24: DNA-Mediated Charge Transport: A Novel Property of DNA with Diverse Applications

Glen Report 29.15: Sequence Modification Using Glen Research's 5-Modified dU Family

Glen Report 6.13: DeoxyUridine Derivatives for Internal Modification

Glen Report 33-15: Technical Note - DNA and RNA Nucleoside Numbering System

Description

Sequence Modifiers are designed for use in automated synthesis. The carboxy-dT is hydrolyzed during deprotection and can be coupled directly to a molecule containing a primary amino group by a standard peptide coupling or via the intermediate N-hydroxysuccinimide (NHS) ester. Amino-Modifier dA, Amino-Modifier dC, N2-Amino-Modifier dG and both Amino-Modifier dT products can be added in place of a dA, dC, dG and dT residue, respectively, during oligonucleotide synthesis. Corresponding Amino-Modifier supports can replace their respective deoxynucleoside supports. After deprotection, the primary amine on the C6 analogues is separated from the oligonucleotide by a spacer arm with a total of 7 -10 atoms and can be labelled or attached to an enzyme. The C2 analogue is more suitable for the attachment of molecules designed to react with the oligonucleotide.

Details

Usage

  • Coupling: Amino-Modifier C2 dT reacts in a manner identical to normal phosphoramidites. To prevent side reactions, synthesize using acetyl-protected dC. See Deprotection for further details.
  • Deprotection: No changes needed from standard method recommended by synthesizer manufacturer. The TFA protecting group is removed during standard ammonium hydroxide deprotection. A minor side reaction during ammonia deprotection can lead to irreversibly capping 2-5% of the amine. This could be significant if multiple additions of the modifier are made. To prevent the reaction, synthesize using acetyl-protected dC and deprotect in 30% ammonia/40% methylamine 1:1 (AMA) at 65°C for 15 minutes.
Specifications
Diluent Anhydrous Acetonitrile
Storage Refrigerated storage, maximum of 2-8°C, dry
Stability 24 hours

Dilution/Coupling Data

The table below show pack size data and, for solutions, dilution and approximate coupling based on normal priming procedures.

ABI 392/394

Catalog # Pack Size Grams/Pack 0.1M Dil. (mL) Approximate Number of Additions
LV40 LV200 40nm 0.2μm 1μm 10μm
10-1037-02 0.25 g .25grams 2.66 75.33 45.2 28.25 20.55 15.07 3.77
10-1037-05 0.5 g .5grams 5.33 164.33 98.6 61.63 44.82 32.87 8.22
10-1037-90 100 µmol .094grams 1 20 12 7.5 5.45 4 1

Expedite

Catalog # Pack Size Grams/Pack Dilution (mL) Approximate Number of Additions
Molarity 50nm 0.2μm 1μm 15μm
10-1037-02 0.25 g .25grams 3.97 0.07 73 45.63 33.18 4.56
10-1037-05 0.5 g .5grams 7.95 0.07 152.6 95.38 69.36 9.54
10-1037-90 100 µmol .094grams 1.5 0.07 23.6 14.75 10.73 1.48

References

Photosensitized [2 + 2] cycloaddition of N-acetylated cytosine affords stereoselective formation of cyclobutane pyrimidine dimer Junpei Yamamoto, Kosuke Nishiguchi, Koichiro Manabe, Chikahide Masutani, Fumio Hanaoka, and Shigenori Iwai

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Product FAQs

  • What is the extinction coefficient of Amino-Modifier C6 dT and C2 dT?