pdU-CE Phosphoramidite

5'-Dimethoxytrityl-5-(1-Propynyl)-2'-deoxyUridine,3'-[(2-cyanoethyl)-(N,N-diisopropyl)]-phosphoramidite

Product Specifications

Formula:

C₄₂H₄₉N₄O₈P

M.W.:

768.85

F.W.:

328.22

CAS Number:

198080-43-2

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Technical Documents

Description

Details

Dilution/Coupling Data

Product FAQs

Technical Documents

Safety Data Sheet

Extinction Table

Glen Report 10.13: Cytofectin GSV Transfection Protocol

Glen Report 11.11: Using Modified Bases to Optimize Hybridization

Glen Report 13.11: C-5 Propynes, Cytofectin and Other Product Updates

Glen Report 17.12: Products for siRNA Research

Glen Report 6.21: C-5 Propyne Derivatives - Antisense Breakthrough

Glen Report 9.11: A Novel Transfection Reagent

Glen Report 33-15: Technical Note - DNA and RNA Nucleoside Numbering System

Description

Substitution of C-5 propynyl-dC (pdC) for dC and C-5 propynyl-dU (pdU) for dT are effective strategies to enhance base pairing. Using these base substitutions, duplex stability and melting temperatures are raised by the following amounts: C-5 propynyl-C 2.8° per substitution; C-5 propynyl-U 1.7° per substitution. AP-dC (G-clamp) substitutes for dC and is another very important modified nucleoside that enhances hybridization by 7-21° per substitution depending upon the sequence and location of the AP-dC. The ability of these modified bases to enhance binding while maintaining specificity has proven useful in antisense research and in the synthesis of high affinity probes. AP-dC is also a fluorescent nucleoside and should find uses in DNA structural research.

Details

Usage

Coupling: No changes needed from standard method recommended by synthesizer manufacturer.
Deprotection: No changes needed from standard method recommended by synthesizer manufacturer.

Specifications
Diluent	Anhydrous Acetonitrile
Storage	Refrigerated storage, maximum of 2-8°C, dry
Stability	Similar to dA,C,G,T-CE Phosphoramidites

Dilution/Coupling Data

The table below show pack size data and, for solutions, dilution and approximate coupling based on normal priming procedures.

ABI 392/394

Catalog #	Pack Size	Grams/Pack	0.1M Dil. (mL)	Approximate Number of Additions
				LV40	LV200	40nm	0.2μm	1μm	10μm
10-1054-02	0.25 g	.25grams	3.25	95	57	35.63	25.91	19	4.75
10-1054-05	0.5 g	.5grams	6.5	203.33	122	76.25	55.45	40.67	10.17
10-1054-90	100 µmol	.077grams	1	20	12	7.5	5.45	4	1

Expedite

Catalog #	Pack Size	Grams/Pack	Dilution (mL)	Approximate Number of Additions
				Molarity	50nm	0.2μm	1μm	15μm
10-1054-02	0.25 g	.25grams	4.85	0.07	90.6	56.63	41.18	5.66
10-1054-05	0.5 g	.5grams	9.71	0.07	187.8	117.38	85.36	11.74
10-1054-90	100 µmol	.077grams	1.5	0.07	23.6	14.75	10.73	1.48