June 2016 |
Synthesis of chemically modified DNA |
Arun Shivalingam, Tom Brown<
Biochemical Society Transactions
Jun 09, 2016, 44 (3) 709-715; DOI: 10.1042/BST20160051/p>
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http://www.glenresearch.com/Literature/709.full.pdf
http://www.biochemsoctrans.org/content/44/3/709
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February 2016 |
RNA epigenetics? |
Chuan He
Nature Chemical Biology
VOL 6, DECEMBER 2010
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http://www.nature.com/nchembio/journal/v6/n12/pdf/nchembio.482.pdf
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August 2015 |
In Vitro Fluorogenic Real-Time Assay of the Repair of Oxidative DNA Damage |
Sarah K. Edwards, Toshikazu Ono, Shenliang Wang, Wei Jiang, Raphael M. Franzini, Jong Wha Jung, Ke Min Chan, and Eric T. Kool ChemBioChem
Volume 16, Issue 11, pages 1637–1646, July 27, 2015
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http://www.glenresearch.com/Literature/Edwards_etal_2015_ChemBioChem.pdf
http://onlinelibrary.wiley.com/doi/10.1002/cbic.201500184/abstract
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July 2014 |
2'-OMe-Phosphorodithioate-Modified siRNAs Show Increased Loading Into The RISC Complex And Enhanced Anti-tumour Activity |
Sherry Y. Wu, Xianbin Yang, Kshipra M. Gharpure, Hiroto Hatakeyama, Martin Egli, Michael H. McGuire, Archana S. Nagaraja, Takahito M. Miyake, Rajesha Rupaimoole, Chad V. Pecot, Morgan Taylor,
Sunila Pradeep, Malgorzata Sierant, Cristian Rodriguez-Aguayo, Hyun J. Choi, Rebecca A. Previs, Guillermo N. Armaiz-Pena, Li Huang, Carlos Martinez, Tom Hassell, Cristina Ivan, Vasudha Sehgal, Richa Singhania, Hee-Dong Han, Chang Su, Ji Hoon Kim, Heather J. Dalton, Chandra Kovvali,
Khandan Keyomarsi, Nigel A.J. McMillan, Willem W. Overwijk, Jinsong Liu, Ju-Seog Lee, Keith A. Baggerly, Gabriel Lopez-Berestein, Prahlad T. Ram, Barbara Nawrot & Anil K. Sood
Nature Communications
S.Y. Wu, et al., Nature Communications, 2014, 5, 3459-3459.
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http://www.glenresearch.com/Literature/NatureCommunication2014.pdf
http://www.nature.com/ncomms/2014/140312/ncomms4459/full/ncomms4459.html
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May 2014 |
Novel Photodynamic Effect of a Psoralen-Conjugated Oligonucleotide for the Discrimination of the Methylation of Cytosine in DNA |
Asako Yamayosh, Yohei Matsuyama, Mikihiko Kushida, Akio Kobori and Akira Murakami
Photochemistry and Photobiology
Volume 90, Issue 3, pages 716–722, May/June 2014
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http://onlinelibrary.wiley.com/doi/10.1111/php.12232/abstract
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May 2014 |
Combined nucleobase and backbone modifications enhance DNA duplex stability and preserve biocompatibility |
Afaf H. El-Saghee and Tom Brown
Chem. Sci.,2014, 5, 253-259
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http://pubs.rsc.org/en/content/articlehtml/2014/sc/c3sc51753e
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November 2013 |
Directed evolution of genetic parts and circuits by compartmentalized partnered replication
|
Jared W Ellefson, Adam J Meyer, Randall A Hughes, Joe R Cannon, Jennifer S Brodbelt & Andrew D Ellington
Nature Biotechnology (2013) doi:10.1038/nbt.2714
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http://www.glenresearch.com/Literature/Ellefson et al. NBT 2013.pdf
http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2714.html
|
August 2013 |
Monitoring eukaryotic and bacterial UDG repair activity with DNA-multifluorophore sensors
|
Toshikazu Ono, Sarah K. Edwards, Shenliang Wang, Wei Jiang, and Eric T. Kool
Nucleic Acids Res. published 3 May 2013, 10.1093/nar/gkt309
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http://nar.oxfordjournals.org/content/early/2013/05/03/nar.gkt309.full.pdf+html
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May 2013 |
Generation of high-affinity DNA aptamers using an expanded genetic alphabet
|
Michiko Kimoto, Rie Yamashige, Ken-ichiro Matsunaga, Shigeyuki Yokoyama & Ichiro Hirao
Nature Biotechnology (2013) doi:10.1038/nbt.2556
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http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2556.html
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December 2012 |
Conjugating Phosphospermines to siRNAs for Improved Stability in Serum, Intracellular Delivery and RNAi-Mediated Gene Silencing
|
Clément Paris, Valérie Moreau, Gaëlle Deglane, Loukmane Karim, Bernard Couturier, Marie-Elise Bonnet, Valérie Kedinger, Mélanie Messmer, Anne-Laure Bolcato-Bellemin, Jean-Paul Behr, Patrick Erbacher, and Nathalie Lenne-Samuel
Mol. Pharmaceutics, 2012, 9 (12), pp 3464-3475
DOI: 10.1021/mp300278b
|
http://pubs.acs.org/doi/abs/10.1021/mp300278b
http://www.glenresearch.com/Literature/Paris_etal_2012.pdf
Supplemental Information
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August 2012 |
Assessing the biocompatibility of click-linked DNA in Escherichia coli
|
A. Pia Sanzone, Afaf H. El-Sagheer, Tom Brown, and Ali Tavassoli
Nucleic Acids Res. published 16 August 2012, 10.1093/nar/gks756
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http://nar.oxfordjournals.org/content/early/2012/08/14/nar.gks756.full
|
June 2012 |
Thermodynamics of the multi-stage DNA lesion recognition and repair by formamidopyrimidine-DNA glycosylase using pyrrolocytosine fluorescence-stopped-flow pre-steady-state kinetics
|
Nikita A. Kuznetsov, Yuri N. Vorobjev, Lev N. Krasnoperov, and Olga S. Fedorova
Nucleic Acids Res. published 14 May 2012, 10.1093/nar/gks423
|
http://nar.oxfordjournals.org/content/early/2012/05/14/nar.gks423.full
|
January 2012 |
Amplified microRNA detection by templated chemistry
|
Emily M. Harcourt and Eric T. Kool
Nucleic Acids Res. published 25 January 2012, 10.1093/nar/gkr1313
|
http://nar.oxfordjournals.org/content/early/2012/01/24/nar.gkr1313.full
|
November 2011 |
Highly specific unnatural base pair systems as a third base pair for PCR amplification
|
Rie Yamashige, Michiko Kimoto, Yusuke Takezawa, Akira Sato, Tsuneo Mitsui, Shigeyuki Yokoyama, and Ichiro Hirao
Nucleic Acids Res. published 24 November 2011, 10.1093/nar/gkr1068
|
http://nar.oxfordjournals.org/content/early/2011/11/24/nar.gkr1068.full
|
September 2011 |
Thymine DNA Glycosylase Can Rapidly Excise 5-Formylcytosine and 5-Carboxylcytosine
POTENTIAL IMPLICATIONS FOR ACTIVE DEMETHYLATION OF CpG SITES |
Yatanu Maiti and Alexander C. Drohat
The Journal of Biological Chemistry, 286, 35334-35338.5
|
http://www.glenresearch.com/Literature/J.Biol.Chem.-2011-Maiti-35334-8.pdf
http://www.jbc.org/content/286/41/35334.abstract
|
August 2011 |
5-Hydroxy-5-methylhydantoin DNA lesion, a molecular trap for DNA glycosylases |
Yann-Vaï Le Bihan, Maria Angeles Izquierdo, Franck Coste, Pierre Aller, Francoise Culard, Tim H. Gehrke, Kadija Essalhi, Thomas Carell and Bertrand Castaing
Nucleic Acids Research, 2011, Vol. 39, No. 14 6277-6290 doi:10.1093/nar/gkr215
|
http://nar.oxfordjournals.org/content/39/14/6277.full-text-lowres.pdf
OR
http://www.glenresearch.com/Literature/LBihan-6277-90.pdf
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June 2011 |
A universal code for RNA recognition by PUF proteins |
Aleksandra Filipovska, Muhammad F M Razif, Karoline K A Nygård & Oliver Rackham
Nature Chemical Biology Published OnLIne:15 May 2011 | DOI: 10.1038/NCHEMBIO.577
|
http://www.glenresearch.com/Literature/nchembio_577_s.pdf
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April 2011 |
Induced cross-linking reactions to target genes using modified oligonucleotides |
F. Nagatsugi and S. Imoto
Organic & Biomolecular Chemistry, 2011, 9, 2579-2585.
|
http://www.glenresearch.com/Literature/April2011.pdf
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March 2011 |
Positional photocleavage control of DNA-based nanoswitches |
Allen K. Mok, Nancy A. Kedzierski, Paul N. Chung and Philip S. Lukeman
Chem. Commun., 2011, Advance Article
|
http://pubs.rsc.org/en/Content/ArticleLanding/2011/CC/C1CC10292C
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Deember 2010 |
A multivalent DNA aptamer specific for the B-cell receptor on human lymphoma and leukemia
|
Prabodhika R. Mallikaratchy, Alessandro Ruggiero, Jeffrey R. Gardner, Vitaly Kuryavyi, William F. Maguire, Mark L. Heaney, Michael R. McDevitt, Dinshaw J. Patel and David A. Scheinberg,
Nucleic Acids Res. First published online October 28, 2010, 10.1093/nar/gkq996 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkq855v1?ct=ct
|
October 2010 |
Photosensitized [2 + 2] cycloaddition of N-acetylated cytosine affords
stereoselective formation of cyclobutane pyrimidine dimer
|
Junpei Yamamoto, Kosuke Nishiguchi, Koichiro Manabe, Chikahide
Masutani, Fumio Hanaoka, and Shigenori Iwai
Nucleic Acids Res. published 29 September 2010, 10.1093/nar/gkq855 Open
Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkq855v1?ct=ct
|
August 2010 |
Deep sequencing analysis of mutations resulting from the incorporation of dNTP analogs
|
Katherine L. Petrie and Gerald F. Joyce
Nucleic Acids Res. published 6 August 2010, 10.1093/nar/gkq68
|
http://nar.oxfordjournals.org/cgi/content/full/gkq685
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July 2010 |
Intracellular delivery of an antisense oligonucleotide via endocytosis of a G protein-coupled receptor
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Xin Ming, Md Rowshon Alam, Michael Fisher, Yongjun Yan, Xiaoyuan Chen, and Rudolph L. Juliano
Nucleic Acids Res. published 15 June 2010, 10.1093/nar/gkq534
|
http://nar.oxfordjournals.org/cgi/content/full/gkq534
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June 2010 |
Solid-Phase Synthesis of Oligodeoxyribonucleotides without Base Protection Utilizing O-Selective Reaction of Oxazaphospholidine Derivatives
|
N. Oka, Y. Maizuru, M. Shimizu, and T. Wada
Nucleosides, Nucleotides and Nucleic Acids, Volume 29, Issue 2 February 2010 , pages 144 - 154
|
http://www.informaworld.com/smpp/content~db=all~content=a919499271~frm=abslink
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May 2010 |
Zip nucleic acids are potent hydrolysis probes for quantitative PCR. |
Clément Paris, Valérie Moreau, Gaëlle Deglane, Emilie Voirin, Patrick Erbacher and Nathalie Lenne-Samuel
Nucleic Acids Res. published 22 March 2010, 10.1093/nar/gkq163 |
http://nar.oxfordjournals.org/cgi/content/full/38/7/e95 |
April 2010 |
Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process. |
Emily M. LeProust, Bill J. Peck, Konstantin Spirin, Heather Brummel McCuen, Bridget Moore, Eugeni Namsaraev, and Marvin H. Caruthers
Nucleic Acids Res. published 22 March 2010, 10.1093/nar/gkq163 |
http://nar.oxfordjournals.org/cgi/content/full/gkq163 |
March 2010 |
Straightforward carbamoylation of nucleophilic compounds employing organic azides, phosphines, and aqueous trialkylammonium hydrogen carbonate. |
Andrey Yagodkin, Kerstin Löschcke, Janne Weisell and Alex Azhayev
Tetrahedron,Volume 66, Issue 12, 20 March 2010, Pages 2210-2221 |
http://www.sciencedirect.com/science/
(PDF) |
February 2010 |
Fluorescent probes for the analysis of DNA strand scission in base excision repair. |
Naoyuki Matsumoto, Tatsuya Toga, Ryosuke Hayashi, Kaoru Sugasawa, Katsuo Katayanagi, Hiroshi Ide, Isao Kuraoka, and Shigenori Iwai
Nucleic Acids Res. published 27 January 2010, 10.1093/nar/gkq022 |
http://nar.oxfordjournals.org/cgi/content/full/gkq022 |
January 2010 |
Nanoparticle-based bio-barcode assay redefines
"undetectable" PSA and biochemical recurrence after radical prostatectomy |
C. Shad Thaxton, Robert Elghanian, Audrey D. Thomas, Savka I. Stoeva, Jae-Seung Lee, Norm D. Smith, Anthony J. Schaeffer, Helmut Klocker, Wolfgang Horninger, Georg Bartsch, and Chad A. Mirkin
PNAS October 19, 2009 doi: 10.1073/pnas.0904719106 |
http://www.pnas.org/content/early/2009/10/16/0904719106.abstract
(pdf version) |
New approach to real-time nucleic acids detection: folding polymerase chain reaction amplicons into a secondary structure to improve cleavage of Förster resonance energy transfer probes in 5'-nuclease assays. |
Igor V. Kutyavin
Nucleic Acids Res. published 7 December 2009, 10.1093/nar/gkp1138 |
http://nar.oxfordjournals.org/cgi/content/abstract/gkp1138 |
December 2009 |
High Fidelity Base Pairing at the 3′-Terminus |
Amritraj Patra and Clemens Richert
J. Am. Chem. Soc., 2009, 131 (35), pp 12671–12681 |
http://pubs.acs.org/doi/abs/10.1021/ja9033654 |
November 2009 |
Biochemical properties and base excision repair complex formation of apurinic/apyrimidinic endonuclease from Pyrococcus furiosus |
Shinichi Kiyonari, Saki Tahara, Tsuyoshi Shirai, Shigenori Iwai, Sonoko Ishino, and Yoshizumi Ishino
Nucleic Acids Res. 2009; 37(19): p. 6439-6453 Open Access |
http://nar.oxfordjournals.org/cgi/content/abstract/37/19/6439?ct=ct |
October 2009 |
Redox signaling between DNA repair proteins for efficient lesion detection |
Amie K. Boal, Joseph C. Genereux, Pamela A. Sontz, Jeffrey A. Gralnick, Dianne K. Newman, and Jacqueline K. Barton
PNAS. 2009; 106:15237-15242 |
http://www.pnas.org/content/106/36/15237.abstract |
September 2009 |
Kinetics of deamination and Cu(II)/H2O2/Ascorbate-induced formation of 5-methylcytosine glycol at CpG sites in duplex DNA |
Huachuan Cao, Yong Jiang, and Yinsheng Wang
Nucleic Acids Res. published 25 August 2009, 10.1093/nar/gkp615 |
http://nar.oxfordjournals.org/cgi/content/full/gkp615 |
August 2009 |
Using photons to manipulate enzyme inhibition by an azobenzene-modified nucleic acid probe |
Youngmi Kima, Joseph A. Phillips, Haipeng Liua, Huaizhi Kanga, and Weihong Tan
PNAS April 21, 2009 vol. 106 no. 16 6489-6494 |
http://www.pnas.org/content/106/16/6489.abstract?sid=b48a43ba-f5e6-4f0d-8209-bc106310f73c |
July 2009 |
Molecular Recognition and Self-Assembly Special Feature: Assembly and organization processes in DNA-directed colloidal crystallization |
Robert J. Macfarlane, Byeongdu Lee, Haley D. Hill, Andrew J. Senesi, Soenke Seifert, and Chad A. Mirkin
PNAS. 2009; 106:10493-10498 |
http://www.pnas.org/content/early/2009/06/18/0900630106.abstract |
June 2009 |
Direct observation of the hole protonation state
and hole localization site in DNA-oligomers |
Amitava Adhikary, Deepti Khanduri, and Michael D. Sevilla
J. Am. Chem. Soc., 2009, 10.1021/ja9014869 |
J. Am. Chem. Soc., 2009, 10.1021/ja9014869
http://www.glenres.com/Literature/ja9014869.pdf (PDF)
http://www.glenres.com/Literature/Literature/ja9014869_si_001.pdf (Supporting Information) |
May 2009 |
Aptamer Switch Probe Based on Intramolecular Displacement |
Zhiwen Tang, Prabodhika Mallikaratchy, Ronghua Yang, Youngmi Kim, Zhi Zhu, Hui Wang and Weihong Tan
J. Am. Chem. Soc., 2008, 130 (34), pp 11268–11269 |
http://pubs.acs.org/doi/abs/10.1021/ja804119s |
April 2009 |
Use of Sloppy Molecular Beacon Probes for Identification of Mycobacterial Species |
Hiyam H. El-Hajj, Salvatore A. E. Marras, Sanjay Tyagi, Elena Shashkina, Mini Kamboj, Timothy E. Kiehn, Michael S. Glickman, Fred Russell Kramer, and David Alland
Journal of Clinical Microbiology, April 2009, p. 1190-1198, Vol. 47, No. 4. |
http://jcm.asm.org/cgi/content/full/47/4/1190
(pdf Version)
|
March 2009 |
RNA major groove modifications improve siRNA
stability and biological activity |
Montserrat Terrazas and Eric T. Kool
346–353 Nucleic Acids Research, 2009, Vol. 37, No. 2 |
http://nar.oxfordjournals.org/cgi/content/full/37/2/346 |
February 2009 |
Human Nei-like protein NEIL3 has AP lyase activity
specific for single-stranded DNA and confers oxidative
stress resistance in Escherichia coli mutant |
Masashi Takao, Yoshitsugu Oohata, Kengo Kitadokoro, Kumiko Kobayashi, Shigenori Iwai, Akira Yasui, Shuji Yonei and Qiu-Mei Zhang
Takao 2009 Genes Cells 261-270 NEIL3 dna repair ox damages.pdf |
Takao 2009 Genes Cells 261-270 NEIL3 dna repair ox damages.pdf |
January 2009 |
Detection of DNA damage: effect of thymidine glycol residues on the thermodynamic, substrate and interfacial acoustic properties of oligonucleotide duplexes. |
Yang, F.; Romanova, E.; Kubareva, E.; Dolinnaya, N.; Gajdos, V.; Burenina, O.; Fedotova, E.; Ellis, J. S.; Oretskaya, T.; Hianik, T.; Thompson, M.
Analyst 2009, 134, (1), 41-51 |
http://www.glenres.com/Literature/DNADamage.pdf |
December 2008 |
Hot Start PCR with heat-activatable primers: a novel approach for improved PCR performance |
Alexandre V. Lebedev, Natasha Paul, Joyclyn Yee, Victor A. Timoshchuk, Jonathan Shum, Kei Miyagi, Jack Kellum, Richard I. Hogrefe, and Gerald Zon
Nucleic Acids Res. published 16 September 2008, 10.1093/nar/gkn575 Open Access |
http://nar.oxfordjournals.org/cgi/content/full/36/20/e131 |
November 2008 |
Examining the ribonuclease H primer grip of HIV-1 reverse transcriptase by charge neutralization of RNA/DNA hybrids |
Chandravanu Dash, Brian J. Scarth, Christopher Badorrek, Matthias Götte, and Stuart F. J. Le Grice
Nucleic Acids Res., Oct 2008; 10.1093/nar/gkn678 |
http://nar.oxfordjournals.org/cgi/content/abstract/gkn678 |
October 2008 |
Directed Evolution of Streptavidin Variants Using In Vitro Compartmentalization |
Matthew Levy and Andrew D. Ellington
SAevol.pdf
|
http://www.glenres.com/Literature/SAevol.pdf |
September 2008 |
The triple helix: 50 years later, the outcome |
Maria Duca, Pierre Vekhoff, Kahina Oussedik, Ludovic Halby, and Paola B. Arimondo
Nucleic Acids Res. published 1 August 2008, 10.1093/nar/gkn493 Open Access |
http://nar.oxfordjournals.org/cgi/content/abstract/gkn493v1?ct=ct |
Pyrrolo-C as a molecular probe for monitoring conformations of the tRNA 3' end |
Chun-Mei Zhang, Cuiping Liu, Thomas Christian, Howard Gamper, Jef Rozenski, Dongli Pan, John B Randolph, Eric Wickstrom, Barry S Cooperman, and Ya-Ming Hou
RNA 28 Aug 2008 |
http://highwire.stanford.edu/cgi/medline/pmid;18755841 |
August 2008 |
Four-color DNA sequencing with 3'-O-modified nucleotide reversible , terminators and chemically cleavable fluorescent dideoxynucleotides |
Jia Guo, Ning Xu, Zengmin Li, Shenglong Zhang, Jian Wu, Dae Hyun Kim, Mong Sano Marma, Qinglin Meng, Huanyan Cao, Xiaoxu Li, Shundi Shi, Lin , Yu, Sergey Kalachikov, James J. Russo, Nicholas J. Turro, and Jingyue , Ju
PNAS. 2008; 105(27): p. 9145-9150 Open Access
|
http://www.glenres.com/Literature/PNAS-2008-Guo-9145-50.pdf
http://www.glenres.com/Literature/RNAS-2008-Guo-Support.pdf |
July 2008 |
Real-Time Reverse Transcription-PCR Assay for Comprehensive Detection of Human Rhinoviruses |
Xiaoyan Lu, Brian Holloway, Ryan K. Dare, Jane Kuypers, Shigeo Yagi, John V. Williams, Caroline B. Hall, and Dean D. Erdman
J. Clin. Microbiol., Feb 2008; 46: 533 - 539
|
http://www.glenres.com/Literature/Lu_Holloway_JClinMicrob533.pdf |
June 2008 |
Formation of the double helix: a mutational study |
Mehrdad Majlessi and Michael M. Becker
Nucleic Acids Res. 2008; 36(9): p. 2981-2989 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/36/9/2981?ct=ct |
May 2008 |
Mismatch formation in solution and on DNA microarrays: how modified nucleosides can overcome shortcomings of imperfect hybridization caused by oligonucleotide composition and base pairing. |
Frank Seela and Simone Budow
Mol Biosyst 2008, 4, (3), 232-245
|
http://www.rsc.org/publishing/journals/MB/article.asp?doi=b713259j |
April 2008 |
DNA binding shifts the redox potential of the transcription factor SoxR |
Alon A. Gorodetsky, Lars E. P. Dietrich, Paul E. Lee, Bruce Demple, Dianne K. Newman, and Jacqueline K. Barton
PNAS. 2008; 105(10): p. 3684-3689
|
http://www.pnas.org/cgi/content/abstract/105/10/3684?ct=ct |
March 2008 |
Microarray analysis using disiloxyl 70mer oligonucleotides |
Marcus Gry Bjorklund, Christian Natanaelsson, Amelie Eriksson, Karlstrom, Yong Hao, and Joakim Lundeberg
Nucleic Acids Res. 2008; 36(4): p. 1334-1342 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/36/4/1334?ct=ct |
February 2008 |
Isoenergetic penta- and hexanucleotide microarray probing and chemical mapping provide a secondary structure model for an RNA element orchestrating R2 retrotransposon protein function |
Elzbieta Kierzek, Ryszard Kierzek, Walter N. Moss, Shawn M. Christensen, Thomas H. Eickbush, and Douglas H. Turner
Nucleic Acids Res. published 5 February 2008, 10.1093/nar/gkm1085 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkm1085v1?ct=ct |
January 2008 |
Three essential and conserved regions of the group II intron are proximal to the 5'-splice site |
Alexandre de Lencastre and Anna Marie Pyle
NA. 2007; 14(1): p. 11-24 Open Access
|
http://www.rnajournal.org/cgi/content/abstract/14/1/11?ct=ct |
December 2007 |
High-throughput Generation of Synthetic Antibodies from Highly Functional Minimalist Phage-displayed Libraries |
Frederic A. Fellouse1, Kaori Esaki, Sara Birtalan, Demetrios Raptis, Vincenzo J. Cancasci, Akiko Koide, Parkash Jhurani, Mark Vasser Christian Wiesmann, Anthony A. Kossiakoff Shohei Koide and Sachdev S. Sidhu
JMB_YSX.pdf
|
JMB_YSX.pdf
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November 2007 |
Trans-lesion synthesis and RNaseH activity by reverse transcriptases on a true abasic RNA template |
Pascal A. Kupfer, Caroline Crey-Desbiolles, and Christian J. Leumann
Nucleic Acids Res. 2007; 35(20): p. 6846-6853 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/20/6846?ct=ct
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October 2007 |
DNA polymerase proofreading: active site switching catalyzed by the bacteriophage T4 DNA polymerase |
Elizabeth Fidalgo da Silva and Linda J. Reha-Krantz
Nucleic Acids Res. 2007; 35(16): p. 5452-5463 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/16/5452?ct=ct
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September 2007 |
Fluorescent nucleoside analogs: synthesis, properties and applications |
Guest editor: Yitzhak Tor
Tetrahedron Vol. 63, No. 17, 2007
|
http://www.glenres.com/Literature/TET_2007_63_17.pdf
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August 2007 |
Synthesis and investigation of deoxyribonucleic acid/locked nucleic acid chimeric molecular beacons |
Chaoyong James Yang, Lin Wang, Yanrong Wu, Youngmi Kim, Colin D. Medley, Hui Lin, and Weihong Tan
Nucleic Acids Res. 2007; 35(12): p. 4030-4041 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/12/4030?ct=ct
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July 2007 |
Enzymatic incorporation of a third nucleobase pair |
Zunyi Yang, A. Michael Sismour, Pinpin Sheng, Nyssa L. Puskar, and Steven A. Benner
Nucleic Acids Res. published 18 June 2007, 10.1093/nar/gkm395 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkm395v1?ct=ct
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June 2007 |
Nucleoside alpha-thiotriphosphates, polymerases and the exonuclease III analysis of oligonucleotides containing phosphorothioate linkages |
Zunyi Yang, A. Michael Sismour, and Steven A. Benner
Nucleic Acids Res. 2007; 35(9): p. 3118-3127 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/9/3118?ct=ct
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May 2007 |
Tolerance of RNA Interference Toward Modifications of the 5' Antisense
Phosphate of Small Interfering RNA |
Samit Shah, Simon H. Friedman
Nucleic Acids Res. published 22 April 2007, 10.1093/nar/gkm234 Open Access
|
http://www.liebertonline.com/doi/abs/10.1089/oli.2006.0067 |
OligoCalc: an online oligonucleotide properties calculator |
Warren A. Kibbe
Nucleic Acids Res. 2006; 34(22): p. 6521-6529 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkm234v1?ct=ct |
April 2007 |
Reversible site-specific tagging of enzymatically synthesized RNAs using aldehyde-hydrazine chemistry and protease-cleavable linkers |
Stephanie Pfander, Roberto Fiammengo, Srecko I. Kirin, Nils Metzler-Nolte, and Andres Jaschke
Nucleic Acids Res. 2007; 35(4): p. e25 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/4/e25?ct=ct
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March 2007 |
High-throughput Fluorescence Labelling of Full-length cDNA Products Based on a Reconstituted Translation System |
Yuko Kawahashi, Nobuhide Doi, Yo Oishi, Chizuru Tsuda, Hideaki Takashima, Tomoya Baba, Hirotada Mori, Takashi Ito, and Hiroshi Yanagawa
J. Biochem. (Tokyo). 2007; 141(1): p. 19-24
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Paper (http://www.glenresearch.com/Literature/March2007.pdf
abstract (http://jb.oxfordjournals.org/cgi/content/abstract/141/1/19?ct=ct) |
February 2007 |
Novel DNA probes with low background and high hybridization-triggered fluorescence |
Eugeny A. Lukhtanov, Sergey G. Lokhov, Vladimir V. Gorn, Mikhail A.
Podyminogin, and Walt Mahoney
Nucleic Acids Res. 2007; 35(5): p. e30 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/5/e30?ct=ct
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January 2007 |
The chemical stability of abasic RNA compared to abasic DNA |
Pascal A. Kupfer and Christian J. Leumann
Nucleic Acids Res. 2007 35: 58-68
|
http://nar.oxfordjournals.org/cgi/content/abstract/35/1/58?etoc |
Sequence-dependent formation of intrastrand crosslink products from the UVB irradiation of duplex DNA containing a 5-bromo-2'-deoxyuridine or 5-bromo-2'-deoxycytidine |
Yu Zeng and Yinsheng Wang
Nucleic Acids Res. 2006; 34(22): p. 6521-6529 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/34/22/6521?ct=ct |
December 2006 |
Mimicking damaged DNA with a small molecule inhibitor of human UNG2 |
Daniel J. Krosky, Mario A. Bianchet, Lauren Seiple, Suhman Chung, L., Mario Amzel, and James T. Stivers
Nucleic Acids Res. 2006; 34(20): p. 5872-5879 Open Acces
|
http://nar.oxfordjournals.org/cgi/content/abstract/34/20/5872?ct=ct
|
November 2006 |
Solid-phase translation and RNA protein fusion:
a novel approach for folding quality control and
direct immobilization of proteins using
anchored mRNA |
Manish Biyani, Yuzuru Husimi and Naoto Nemoto
Nucleic Acids Research, 2006, Vol. 00, No. 00
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkl771v1Ê
|
October 2006 |
Dynamic assembly of primers on nucleic acid templates |
Nicole A. Leal, Makoto Sukeda,Ê and Steven A. Benner
Nucleic Acids Res. published 28 September 2006, 10.1093/nar/gkl625 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkl625v2?ct=ct |
Controlling activation of the RNA-dependent protein kinase by siRNAs using site-specific chemical modification |
Sujiet Puthenveetil, Landon Whitby, Jin Ren, Kevin Kelnar, Joseph F. Krebs, and Peter A. Beal
Nucleic Acids Res. published 18 September 2006, 10.1093/nar/gkl464 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkl464v1?ct=ct |
September 2006 |
Chemical synthesis of oligodeoxyribonucleotides containing the Dewar valence isomer of the (6-4) photoproduct and their use in (6-4) photolyase studies |
Junpei Yamamoto, Kenichi Hitomi, Takeshi Todo,and Shigenori Iwai
Nucleic Acids Res. published 26 August 2006, 10.1093/nar/gkl572 Open Access
|
http://nar.oxfordjournals.org/cgi/content/abstract/gkl572v1?ct=ct
|
August 2006 |
IPyrene binary probes for unambiguous detection of mRNA using time-resolvedû
fluorescence spectroscop |
Angel A. Marti, Xiaoxu Li, Steffen Jockusch, Zengmin Li, BinduûRaveendra, Sergey Kalachikov, James J. Russo, Irina Morozova, Sathyanarayanan V. Puthanveettil, Jingyue Ju, and Nicholas J. Turro
Nucleic Acids Res. 2006;û 34(10): p. 3161-3168 Open Access
|
http://nar.oxfordjournals.org/cgi/content/full/34/10/3161 |
Widespread siRNA "off-target" transcript silencing mediated by seed
region sequence complementarity |
Aimee L. Jackson, Julja Burchard, Janell Schelter, B. Nelson Chau, Michele Cleary, Lee Lim, and Peter S. Linsley
RNA. 2006;û 12(7): p. 1179-1187 Open Access
|
http://www.rnajournal.org/cgi/content/short/rna.25706v1 |
July 2006 |
Formation of N-branched oligonucleotides as by-products in solid-phase oligonucleotide synthesis |
Cazenave C, Bathany K, Rayner B
Oligonucleotides 16 (2): 181-185 2006
|
http://www.liebertonline.com/doi/abs/10.1089/oli.2006.16.181
(PDF)
|
June 2006 |
Improvement of an Unusual Twin-Arginine Transporter Leader Peptide by a
Codon-Based Randomization Approach |
Olga Monroy-Lagos, Xavier Soberon, Paul Gaytan, and Joel Osuna
Appl. Envir. Microbiol. 2006;û 72(5): p. 3797-3801
|
http://aem.asm.org/cgi/content/abstract/72/5/3797 |
Electron trap for DNA-bound repair enzymes: A strategy for DNA-mediated signaling |
Eylon Yavin, Eric D. A. Stemp, Valerie L. OShea, Sheila S. David, and Jacqueline K. Barton
PNAS; March 7, 2006; vol. 103; no. 10; 3610-3614û
|
http://www.pnas.org/cgi/content/abstract/103/10/3610 |
May 2006 |
Tumor Targeting by an Aptamer |
Arian J. Hicke, Andrew W. Stephens, Ty Gould, Ying-Fon Chang, Cynthia K. Lynott, James Heil, Sandra Borkowski, Christoph-Stephan Hilger, Gary Cook, Stephen Warren, and Paul G. Schmidt
J Nucl Med. 2006;û 47(4): p. 668-678
|
http://jnm.snmjournals.org/cgi/content/abstract/47/4/668?ck=nck |
April 2006 |
Molecular beacons with intrinsically fluorescent nucleotides |
Angel A. Marti, Steffen Jockusch, Zengmin Li, Jingyue Ju, and
Nicholas J. Turro
Nucleic Acids Res. 2006; 34(6): p. e50
|
http://nar.oxfordjournals.org/cgi/content/abstract/34/6/e50?ct |
March 2006 |
Pyrrolo-C as a fluorescent probe for monitoring RNA secondary structure formation |
Rebecca A. Tinsley and Nils G. Walter
RNA, DOI: 10.1261/rna.2165806
|
http://www.rnajournal.org/cgi/content/abstract/rna.2165806v1 |
Novel thermostable Y-family polymerases: applications for the PCR amplification of damaged or ancient DNAs |
John P. McDonald, Ashley Hall, Didier Gasparutto, Jean Cadet, Jack
Ballantyne, and Roger Woodgate
Nucleic Acids Res. 2006;û 34(4): p. 1102-1111
|
http://nar.oxfordjournals.org/cgi/content/full/34/4/1102 |
February 2006 |
Examining Ty3 Polypurine Tract Structure and Function by Nucleoside Analog
Interference |
Chandravanu Dash, John P. Marino, and Stuart F. J. Le Grice
Pedersen
J. Biol. Chem. 2006; 281(5): p. 2773-2783
|
http://www.jbc.org/cgi/content/abstract/281/5/2773?ct |
January 2006 |
Easily denaturing nucleic acids derived from intercalating nucleic acids:
thermal stability studies, dual duplex invasion and inhibition of
transcription start |
Vyacheslav V. Filichev, Birte Vester, Lykke H. Hansen, and Erik B.
Pedersen
Nucl. Acids Res. 2005 33: 7129-7137.
|
http://nar.oxfordjournals.org/cgi/content/abstract/33/22/7129?etoc |
December 2005 |
Color-blind fluorescence detection for four-color DNA sequencing |
Ernest K. Lewis, Wade C. Haaland, Freddy Nguyen, Daniel A. Heller, Matthew J. Allen, Robert R. MacGregor, C. Scott Berger, Britain Willingham, Lori A. Burns, Graham B. I. Scott, Carter Kittrell, Bruce R. Johnson, Robert F. Curl and Michael L. Metzker
PNAS, April 12,2005, vol.102, no. 15,5346-535
|
http://www.pnas.org/cgi/content/full/102/15/5346 |
November 2005 |
Recognition of CG inversions in DNA triple helices by methylated 3H-pyrrolo[2,3-d]pyrimidin-2(7H)-one nucleoside analogues. |
Rohan T. Ranasinghe, David A. Rusling, Vicki E. C. Powers, Keith R. Fox and Tom Brown
Chemical Communications, 2005,û(20),û2555 - 2557.
|
http://www.rsc.org/publishing/journals/CC/article.asp?doi=b502325d |
October 2005 |
Triplex-induced recombination and repair in the pyrimidine motif. |
Jennifer M. Kalish, Michael M. Seidman, Daniel L. Weeks, and Peter M. Glazer
Nucl. Acids Res. 2005 33: 3492-3502.
|
http://nar.oxfordjournals.org/cgi/reprint/33/11/3492 |
September 2005 |
Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization. |
M. Levy, K.E. Griswold, and A.D. Ellington
RNA, 2005, rna.2121705
|
http://www.rnajournal.org/cgi/content/abstract/rna.2121705v1 |
August 2005 |
tRNA-linked molecular beacons for imaging
mRNAs in the cytoplasm of living cells |
Musa M. Mhlanga1, Diana Y. Vargas, Cindy W. Fung, Fred Russell Kramer
and Sanjay Tyagi
1902-1912
Nucleic Acids Research, 2005, Vol. 33, No. 6
|
http://nar.oxfordjournals.org/cgi/reprint/33/6/1902 |
July 2005 |
DNA microarrays on a dendron-modified surface improve significantly the
detection of single nucleotide variations in the p53 gene |
Soon Jin Oh, et al
Nucl. Acids Res. 2005 33: e90. |
http://nar.oxfordjournals.org/cgi/reprint/33/10/e90 |
June 2005 |
Investigating HIV-1 Polypurine Tract Geometry via Targeted Insertion of
Abasic Lesions in the(-)-DNA Template and (+)-RNA Primer |
Hye Young Yi-Brunozzi and Stuart F. J. Le Grice
J. Biol. Chem. 2005; 280(20): p. 20154-20162 |
http://www.jbc.org/cgi/content/abstract/280/20/20154?ct
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