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Catalog Number: 10-1096-xx
Description: Thymidine Glycol CE Phosphoramidite
| 5'-Dimethoxytrityl-2'-deoxy-(5R,6S)-5,6-bis(t-butyldimethylsilyloxy)- 5,6-dihydroThymidine,3'-[(2-cyanoethyl)-(N,N-diisopropyl)]- phosphoramidite | ||
| Formula: C52H79N4O10PSi2 | M.W.: 1007.36 | F.W.: 338.21 |
Diluent: Anhydrous Acetonitrile |
| Coupling: 3 minute coupling time is recommended. Monomers that allow for UltraMILD deprotection must be used. (Catalog Numbers: dA: 10-1601-xx, dC: 10-1015-xx, dG: 10-1621-xx, dT: 10-1030-xx.). To avoid any exchange of the iPr-Pac group on the dG with acetyl, use the UltraMild Cap Mix A (40-4210-xx/ 40-4212-xx). |
| Deprotection: Cleave and deprotect the oligonucleotide in 30% Ammonium Hydroxide for 2 hours at Room Temperature. Dry down and dissolve the residue in 0.5 mL of TEA.3HF and keep at 40° C overnight to remove the TBDMS protecting groups. Add an equal volume of dH2O and desalt on a Glen Gel-Pak™ column or equivalent. |
| Storage: Freezer storage, -10 to -30°C, dry |
| Stability in Solution: 2-3 days |
| Catalog Information | Material Safety Data Sheet |
Literature Highlights
| Glen Report 16.1: Minor Base and Related Novel Phosphoramidites |
DILUTION/COUPLING DATA
The table below shows pack size data and, for solutions, dilutions and approximate couplings based on normal priming procedures. Please link for more detailed usage information with the various synthesizers.
| ABI 392/394 | |||||||||
| Cat.No. | Pack Size | Grams/ Pack | 0.1M Dil. (mL) | LV40 | LV200 | 40nm | 0.2µm | 1µm | 10µm |
| Approximate Number of Additions | |||||||||
| 10-1096-02 | 0.25grams | .25grams | 2.48 | 69.33 | 41.6 | 26 | 18.91 | 13.87 | 3.47 |
| 10-1096-90 | 100µmoles | .101grams | 1 | 20 | 12 | 7.5 | 5.45 | 4 | 1 |
| 10-1096-95 | 50µmoles | .05grams | .5 | 3.33 | 2 | 1.25 | .91 | .67 | .17 |
| Expedite | |||||||||
| Cat.No. | Pack Size | Grams/ Pack | Dilution (mL) | Molarity | 50nm | 0.2µm | 1µm | 15µm | |
| Approximate Number of Additions | |||||||||
| 10-1096-02 | 0.25grams | .25grams | 3.7 | .07 | 67.6 | 42.25 | 30.73 | 4.23 | |
| 10-1096-90 | 100µmoles | .101grams | 1.5 | .07 | 23.6 | 14.75 | 10.73 | 1.48 | |
| 10-1096-95 | 50µmoles | .05grams | .75 | .07 | 8.6 | 5.38 | 3.91 | .54 | |
| Beckman | |||||||||
| Cat.No. | Pack Size | Grams/ Pack | Dilution (mL) | Molarity | 30nm | 200nm | 1000nm | ||
| Approximate Number of Additions | |||||||||
| 10-1096-02 | 0.25grams | .25grams | 3.7 | .07 | 69.2 | 43.25 | 31.45 | ||
| 10-1096-90 | 100µmoles | .101grams | 1.5 | .07 | 25.2 | 15.75 | 11.45 | ||
| 10-1096-95 | 50µmoles | .05grams | .75 | .07 | 10.2 | 6.38 | 4.64 | ||
08/15/2012 | http://www.glenres.com/ProductFiles/10-1096.html